IL_4V7R_025

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

4V7R|1|A1|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_025 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.3302

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V7R|1|A1|U|447
4V7R|1|A1|C|448
*
4V7R|1|A1|G|458
4V7R|1|A1|G|459
4V7R|1|A1|A|460

Current chains

Chain A1

18S ribosomal RNA

Nearby chains