IL_4V7R_027

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

4V7R|1|A1|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_027 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.3179

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4V7R|1|A1|U|482
4V7R|1|A1|A|483
*
4V7R|1|A1|U|504
4V7R|1|A1|A|505
4V7R|1|A1|A|506

Current chains

Chain A1

18S ribosomal RNA

Nearby chains