IL_4V7R_032

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

4V7R|1|A1|G|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_032 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.2042

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7R|1|A1|A|550
4V7R|1|A1|G|551
4V7R|1|A1|G|552
4V7R|1|A1|G|553
4V7R|1|A1|C|554
4V7R|1|A1|A|555
4V7R|1|A1|A|556
4V7R|1|A1|G|557
4V7R|1|A1|U|558
4V7R|1|A1|C|559
*
4V7R|1|A1|G|586
4V7R|1|A1|C|587
4V7R|1|A1|U|588

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S9-A