IL_4V7R_049

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_049 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.185

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V7R|1|A1|G|985
4V7R|1|A1|G|986
4V7R|1|A1|G|987
4V7R|1|A1|A|988
4V7R|1|A1|U|989
4V7R|1|A1|C|990
*
4V7R|1|A1|G|1014
4V7R|1|A1|U|1015
4V7R|1|A1|C|1016

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S14-A

Chain Bg

60S ribosomal protein L43