3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
4V7R|1|A1|C|1096
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_052 not in the Motif Atlas
Geometric match to IL_2W2H_002
Geometric discrepancy: 0.2711
The information below is about IL_2W2H_002
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_19557.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

4V7R|1|A1|C|1034
4V7R|1|A1|G|1035
4V7R|1|A1|A|1036
*
4V7R|1|A1|U|1095
4V7R|1|A1|C|1096
4V7R|1|A1|U|1097
4V7R|1|A1|U|1098
4V7R|1|A1|U|1099
4V7R|1|A1|G|1100
4V7R|1|A1|G|1101

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain AB
40S ribosomal protein S2
Chain AO
40S ribosomal protein S22-A

Coloring options:


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