IL_4V7R_054

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_054 not in the Motif Atlas

Geometric match to IL_5J7L_005

Geometric discrepancy: 0.177

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V7R|1|A1|G|1051
4V7R|1|A1|U|1052
4V7R|1|A1|G|1053
*
4V7R|1|A1|C|1066
4V7R|1|A1|C|1067

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S0-A

Chain Ac

Unassigned secondary structure