IL_4V7R_065

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

4V7R|1|A1|G|1273, 4V7R|1|A1|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_065 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.3458

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V7R|1|A1|U|1272
4V7R|1|A1|G|1273
4V7R|1|A1|C|1274
4V7R|1|A1|A|1275
*
4V7R|1|A1|U|1437
4V7R|1|A1|G|1438

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S3

Chain AN

40S ribosomal protein S20