IL_4V7R_070

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

4V7R|1|A1|A|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_070 not in the Motif Atlas

Geometric match to IL_5TBW_113

Geometric discrepancy: 0.361

The information below is about IL_5TBW_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V7R|1|A1|U|1340
4V7R|1|A1|A|1341
4V7R|1|A1|C|1342
*
4V7R|1|A1|G|1383
4V7R|1|A1|A|1384

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S16

Chain AN

40S ribosomal protein S20

Chain AT

Guanine nucleotide-binding protein subunit beta-like protein; RACK-1