IL_4V7R_098

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AAU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_098 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.2397

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V7R|1|B1|A|122
4V7R|1|B1|A|123
4V7R|1|B1|U|124
*
4V7R|1|B1|A|144
4V7R|1|B1|G|145
4V7R|1|B1|U|146

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain BH

60S ribosomal protein L8-A

Chain BO

60S ribosomal protein L15-A