3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CUG*CCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_099 not in the Motif Atlas
Homologous match to IL_8C3A_008
Geometric discrepancy: 0.3302
The information below is about IL_8C3A_008
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4V7R|1|B1|C|125
4V7R|1|B1|U|126
4V7R|1|B1|G|127
*
4V7R|1|B1|C|141
4V7R|1|B1|C|142
4V7R|1|B1|G|143

Current chains

Chain B1
25S ribosomal RNA

Nearby chains

Chain B3
5.8S ribosomal RNA; 5.8S rRNA
Chain BO
60S ribosomal protein L15-A
Chain BW
60S ribosomal protein L25

Coloring options:


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