IL_4V7R_107

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

4V7R|1|B1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_107 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.12

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V7R|1|B1|G|337
4V7R|1|B1|A|338
4V7R|1|B1|C|339
*
4V7R|1|B3|G|25
4V7R|1|B3|U|26

Current chains

Chain B1

25S ribosomal RNA

Chain B3

5.8S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L4-A