IL_4V7R_117

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUGG*CCAGC

Length

10 nucleotides

Bulged bases

4V7R|1|B1|A|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_117 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.3821

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V7R|1|B1|G|510
4V7R|1|B1|G|511
4V7R|1|B1|U|512
4V7R|1|B1|G|513
4V7R|1|B1|G|514
*
4V7R|1|B1|C|576
4V7R|1|B1|C|577
4V7R|1|B1|A|578
4V7R|1|B1|G|579
4V7R|1|B1|C|580

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L6-A

Chain BG

60S ribosomal protein L7-A