IL_4V7R_132

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_132 not in the Motif Atlas

Geometric match to IL_4E48_003

Geometric discrepancy: 0.179

The information below is about IL_4E48_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7R|1|B1|C|824
4V7R|1|B1|U|825
4V7R|1|B1|G|826
*
4V7R|1|B1|U|899
4V7R|1|B1|G|900
4V7R|1|B1|G|901

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L2

Chain Bd

60S ribosomal protein L37-A