IL_4V7R_135

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_135 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.1782

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V7R|1|B1|G|869
4V7R|1|B1|G|870
4V7R|1|B1|U|871
4V7R|1|B1|U|872
*
4V7R|1|B1|A|888
4V7R|1|B1|U|889
4V7R|1|B1|C|890

Current chains

Chain B1

25S ribosomal RNA

Nearby chains