IL_4V7R_139

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_139 not in the Motif Atlas

Homologous match to IL_5TBW_035

Geometric discrepancy: 0.1698

The information below is about IL_5TBW_035

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V7R|1|B1|C|969
4V7R|1|B1|A|970
*
4V7R|1|B1|U|1111
4V7R|1|B1|A|1112
4V7R|1|B1|G|1113

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BR

60S ribosomal protein L18

Chain BT

60S ribosomal protein L21-A

Chain BY

60S ribosomal protein L28