IL_4V7R_141

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

4V7R|1|B1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_141 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1848

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V7R|1|B1|A|983
4V7R|1|B1|G|984
4V7R|1|B1|U|985
*
4V7R|1|B1|A|1099
4V7R|1|B1|U|1100

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BG

60S ribosomal protein L7-A