IL_4V7R_158

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V7R|1|B1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_158 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.1956

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V7R|1|B1|G|1207
4V7R|1|B1|U|1208
4V7R|1|B1|G|1209
*
4V7R|1|B1|C|1296
4V7R|1|B1|C|1297

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA