IL_4V7R_159

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_159 not in the Motif Atlas

Geometric match to IL_2ZKO_001

Geometric discrepancy: 0.2072

The information below is about IL_2ZKO_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7R|1|B1|U|1210
4V7R|1|B1|U|1211
4V7R|1|B1|A|1212
*
4V7R|1|B1|U|1293
4V7R|1|B1|A|1294
4V7R|1|B1|G|1295

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain BF

60S ribosomal protein L6-A

Chain BI

60S ribosomal protein L9-A

Chain BJ

60S ribosomal protein L10