3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_184 not in the Motif Atlas
Geometric match to IL_5TBW_076
Geometric discrepancy: 0.15
The information below is about IL_5TBW_076
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

4V7R|1|B1|G|1898
4V7R|1|B1|G|1899
4V7R|1|B1|A|1900
4V7R|1|B1|A|1901
*
4V7R|1|B1|U|2336
4V7R|1|B1|C|2337

Current chains

Chain B1
25S ribosomal RNA

Nearby chains

Chain BC
60S ribosomal protein L3
Chain BU
60S ribosomal protein L23

Coloring options:


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