IL_4V7R_186

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4V7R|1|B1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_186 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.1307

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V7R|1|B1|C|1918
4V7R|1|B1|G|1919
4V7R|1|B1|U|1920
4V7R|1|B1|A|1921
4V7R|1|B1|A|1922
4V7R|1|B1|C|1923
*
4V7R|1|B1|G|1928
4V7R|1|B1|G|1929
4V7R|1|B1|A|1930
4V7R|1|B1|U|1931
4V7R|1|B1|A|1932
4V7R|1|B1|A|1933
4V7R|1|B1|G|1934

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain Ae

Unassigned secondary structure

Chain Bg

60S ribosomal protein L43