IL_4V7R_192

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

4V7R|1|B1|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_192 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1561

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V7R|1|B1|C|2196
4V7R|1|B1|C|2197
4V7R|1|B1|A|2198
4V7R|1|B1|G|2199
*
4V7R|1|B1|C|2245
4V7R|1|B1|G|2246

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain BB

60S ribosomal protein L2