3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GAA*UACC
Length
7 nucleotides
Bulged bases
4V7R|1|B1|A|2397, 4V7R|1|B1|C|2983
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_201 not in the Motif Atlas
Homologous match to IL_5TBW_092
Geometric discrepancy: 0.3376
The information below is about IL_5TBW_092
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_54678.7
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V7R|1|B1|G|2396
4V7R|1|B1|A|2397
4V7R|1|B1|A|2398
*
4V7R|1|B1|U|2981
4V7R|1|B1|A|2982
4V7R|1|B1|C|2983
4V7R|1|B1|C|2984

Current chains

Chain B1
25S ribosomal RNA

Nearby chains

Chain BC
60S ribosomal protein L3
Chain BQ
60S ribosomal protein L17-A

Coloring options:


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