IL_4V7R_214

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_214 not in the Motif Atlas

Homologous match to IL_5TBW_101

Geometric discrepancy: 0.1704

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend with bulge

Broad Annotation

Single stack bend with bulge

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V7R|1|B1|G|2770
4V7R|1|B1|U|2771
4V7R|1|B1|C|2772
4V7R|1|B1|C|2773
*
4V7R|1|B1|G|2787
4V7R|1|B1|C|2788

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BY

60S ribosomal protein L28

Chain Bf

60S ribosomal protein L42