IL_4V7R_215

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_215 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.2345

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4V7R|1|B1|G|2823
4V7R|1|B1|G|2824
*
4V7R|1|B1|U|2865
4V7R|1|B1|U|2866
4V7R|1|B1|C|2867

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BJ

60S ribosomal protein L10