IL_4V7R_265

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_265 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.271

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

4V7R|1|C1|U|117
4V7R|1|C1|U|118
4V7R|1|C1|A|119
4V7R|1|C1|U|120
4V7R|1|C1|U|121
4V7R|1|C1|U|122
*
4V7R|1|C1|A|295
4V7R|1|C1|U|296
4V7R|1|C1|U|297
4V7R|1|C1|C|298
4V7R|1|C1|A|299

Current chains

Chain C1

18S ribosomal RNA

Nearby chains