IL_4V7R_268

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCGAC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_268 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.387

The information below is about IL_1U6B_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V7R|1|C1|U|185
4V7R|1|C1|C|186
4V7R|1|C1|G|187
4V7R|1|C1|A|188
4V7R|1|C1|C|189
*
4V7R|1|C1|G|196
4V7R|1|C1|A|197
4V7R|1|C1|A|198
4V7R|1|C1|G|199
4V7R|1|C1|A|200

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain Ch

Unassigned secondary structure