3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GGA*UUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_324 not in the Motif Atlas
Geometric match to IL_3SZX_003
Geometric discrepancy: 0.1543
The information below is about IL_3SZX_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V7R|1|C1|G|1294
4V7R|1|C1|G|1295
4V7R|1|C1|A|1296
*
4V7R|1|C1|U|1301
4V7R|1|C1|U|1302
4V7R|1|C1|U|1303

Current chains

Chain C1
18S ribosomal RNA

Nearby chains

Chain CA
40S ribosomal protein S0-A
Chain CB
40S ribosomal protein S2

Coloring options:


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