IL_4V7R_347

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_347 not in the Motif Atlas

Geometric match to IL_4JGN_004

Geometric discrepancy: 0.2864

The information below is about IL_4JGN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V7R|1|D1|G|18
4V7R|1|D1|U|19
4V7R|1|D1|A|20
*
4V7R|1|D3|U|139
4V7R|1|D3|G|140
4V7R|1|D3|C|141

Current chains

Chain D1

25S ribosomal RNA

Chain D3

5.8S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L15-A

Chain DW

60S ribosomal protein L25