IL_4V7R_349
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- UGAACUU*AUCAAUAA
- Length
- 15 nucleotides
- Bulged bases
- 4V7R|1|D1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7R_349 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.269
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V7R|1|D1|U|32
4V7R|1|D1|G|33
4V7R|1|D1|A|34
4V7R|1|D1|A|35
4V7R|1|D1|C|36
4V7R|1|D1|U|37
4V7R|1|D1|U|38
*
4V7R|1|D1|A|45
4V7R|1|D1|U|46
4V7R|1|D1|C|47
4V7R|1|D1|A|48
4V7R|1|D1|A|49
4V7R|1|D1|U|50
4V7R|1|D1|A|51
4V7R|1|D1|A|52
Current chains
- Chain D1
- 25S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L15-A
- Chain DY
- 60S ribosomal protein L28
- Chain Dd
- 60S ribosomal protein L37-A
- Chain Df
- 60S ribosomal protein L42
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