3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
AGA*UCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: AGA,UCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_359 not in the Motif Atlas
Geometric match to IL_4WF9_042
Geometric discrepancy: 0.1953
The information below is about IL_4WF9_042
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V7R|1|D1|A|334
4V7R|1|D1|G|335
4V7R|1|D1|A|336
*
4V7R|1|D3|U|27
4V7R|1|D3|C|28
4V7R|1|D3|U|29

Current chains

Chain D1
25S ribosomal RNA
Chain D3
5.8S ribosomal RNA

Nearby chains

Chain DD
60S ribosomal protein L4-A
Chain DX
60S ribosomal protein L26-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2589 s
Application loaded.