IL_4V7R_382

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_382 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.1524

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7R|1|D1|C|803
4V7R|1|D1|C|804
4V7R|1|D1|G|805
*
4V7R|1|D1|C|938
4V7R|1|D1|U|939
4V7R|1|D1|G|940

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DD

60S ribosomal protein L4-A

Chain DY

60S ribosomal protein L28