IL_4V7R_384

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

4V7R|1|D1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_384 not in the Motif Atlas

Geometric match to IL_5TBW_029

Geometric discrepancy: 0.1947

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V7R|1|D1|G|833
4V7R|1|D1|U|834
*
4V7R|1|D1|G|859
4V7R|1|D1|G|860
4V7R|1|D1|C|861

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L2

Chain DS

60S ribosomal protein L19

Chain Dg

60S ribosomal protein L43