IL_4V7R_403

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_403 not in the Motif Atlas

Geometric match to IL_9NLN_007

Geometric discrepancy: 0.3773

The information below is about IL_9NLN_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V7R|1|D1|U|1073
4V7R|1|D1|U|1074
4V7R|1|D1|A|1075
4V7R|1|D1|C|1076
*
4V7R|1|D1|G|1083
4V7R|1|D1|A|1084
4V7R|1|D1|A|1085

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DE

60S ribosomal protein L5

Chain DT

60S ribosomal protein L21-A