IL_4V7R_411

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

4V7R|1|D1|U|1235, 4V7R|1|D1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_411 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4686

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7R|1|D1|G|1234
4V7R|1|D1|U|1235
4V7R|1|D1|G|1236
4V7R|1|D1|G|1237
4V7R|1|D1|C|1238
*
4V7R|1|D1|G|1250
4V7R|1|D1|A|1251
4V7R|1|D1|A|1252
4V7R|1|D1|U|1253
4V7R|1|D1|C|1254

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DL

60S ribosomal protein L12