IL_4V7R_454

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAG*UGGGG

Length

9 nucleotides

Bulged bases

4V7R|1|D1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_454 not in the Motif Atlas

Geometric match to IL_9BZC_001

Geometric discrepancy: 0.3972

The information below is about IL_9BZC_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

4V7R|1|D1|C|2422
4V7R|1|D1|U|2423
4V7R|1|D1|A|2424
4V7R|1|D1|G|2425
*
4V7R|1|D1|U|2604
4V7R|1|D1|G|2605
4V7R|1|D1|G|2606
4V7R|1|D1|G|2607
4V7R|1|D1|G|2608

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L2

Chain DO

60S ribosomal protein L15-A

Chain Df

60S ribosomal protein L42