IL_4V7R_460

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

4V7R|1|D1|A|2523, 4V7R|1|D1|A|2524, 4V7R|1|D1|G|2585, 4V7R|1|D1|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|A|2520
4V7R|1|D1|U|2521
4V7R|1|D1|G|2522
4V7R|1|D1|A|2523
4V7R|1|D1|A|2524
4V7R|1|D1|G|2525
4V7R|1|D1|C|2526
*
4V7R|1|D1|G|2584
4V7R|1|D1|G|2585
4V7R|1|D1|G|2586
4V7R|1|D1|U|2587

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain D3

5.8S ribosomal RNA; 5.8S rRNA

Chain DB

60S ribosomal protein L2

Chain DH

60S ribosomal protein L8-A

Chain Di

Unassigned secondary structure