IL_4V7R_474

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

4V7R|1|D1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_474 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.2118

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V7R|1|D1|U|2891
4V7R|1|D1|A|2892
*
4V7R|1|D1|U|2909
4V7R|1|D1|A|2910
4V7R|1|D1|A|2911
4V7R|1|D1|G|2912

Current chains

Chain D1

25S ribosomal RNA

Nearby chains