IL_4V7R_495

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACA,UGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_495 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.2613

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7R|1|D1|A|3320
4V7R|1|D1|C|3321
4V7R|1|D1|A|3322
*
4V7R|1|D1|U|3385
4V7R|1|D1|G|3386
4V7R|1|D1|U|3387

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DC

60S ribosomal protein L3

Chain Da

60S ribosomal protein L31-A