IL_4V7R_502

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_502 not in the Motif Atlas

Homologous match to IL_8P9A_369

Geometric discrepancy: 0.5536

The information below is about IL_8P9A_369

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7R|1|D2|A|72
4V7R|1|D2|C|73
4V7R|1|D2|C|74
4V7R|1|D2|G|75
4V7R|1|D2|A|76
4V7R|1|D2|G|77
4V7R|1|D2|U|78
4V7R|1|D2|A|79
4V7R|1|D2|G|80
*
4V7R|1|D2|C|100
4V7R|1|D2|G|101
4V7R|1|D2|A|102
4V7R|1|D2|A|103
4V7R|1|D2|A|104
4V7R|1|D2|C|105
4V7R|1|D2|U|106

Current chains

Chain D2

5S ribosomal RNA

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA

Chain DF

60S ribosomal protein L6-A