IL_4V7R_513

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

4V7R|1|B1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_513 not in the Motif Atlas

Geometric match to IL_5J7L_064

Geometric discrepancy: 0.3647

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V7R|1|B1|U|1074
4V7R|1|B1|A|1075
4V7R|1|B1|C|1076
*
4V7R|1|B1|G|1083
4V7R|1|B1|A|1084

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BE

60S ribosomal protein L5

Chain BT

60S ribosomal protein L21-A

Chain Bp

Unassigned secondary structure