3D structure

PDB id
4V7S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to telithromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
4V7S|1|CA|U|244, 4V7S|1|CA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7S_201 not in the Motif Atlas
Geometric match to IL_5J7L_014
Geometric discrepancy: 0.1091
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4V7S|1|CA|G|242
4V7S|1|CA|A|243
4V7S|1|CA|U|244
4V7S|1|CA|U|245
4V7S|1|CA|A|246
4V7S|1|CA|G|247
*
4V7S|1|CA|C|277
4V7S|1|CA|G|278
4V7S|1|CA|A|279
4V7S|1|CA|C|280
4V7S|1|CA|G|281
4V7S|1|CA|A|282
4V7S|1|CA|U|283
4V7S|1|CA|C|284

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CL
30S ribosomal protein S12
Chain CQ
30S ribosomal protein S17

Coloring options:


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