IL_4V7T_026

3D structure

PDB id

4V7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7T_026 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.5002

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V7T|1|AA|G|450
4V7T|1|AA|A|451
4V7T|1|AA|A|452
4V7T|1|AA|G|453
4V7T|1|AA|G|454
4V7T|1|AA|G|455
*
4V7T|1|AA|C|477
4V7T|1|AA|A|478
4V7T|1|AA|U|479
4V7T|1|AA|U|480
4V7T|1|AA|G|481
4V7T|1|AA|A|482
4V7T|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16