IL_4V7U_309

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_309 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.1887

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V7U|1|DA|C|1386
4V7U|1|DA|A|1387
4V7U|1|DA|G|1388
*
4V7U|1|DA|C|1399
4V7U|1|DA|U|1400
4V7U|1|DA|G|1401

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23