3D structure

PDB id
4V7U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to erythromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCCG*CGGU
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7U_315 not in the Motif Atlas
Geometric match to IL_1D4R_001
Geometric discrepancy: 0.2063
The information below is about IL_1D4R_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

4V7U|1|DA|G|1445
4V7U|1|DA|C|1446
4V7U|1|DA|C|1447
4V7U|1|DA|G|1448
*
4V7U|1|DA|C|1463
4V7U|1|DA|G|1464
4V7U|1|DA|G|1465
4V7U|1|DA|U|1466

Current chains

Chain DA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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