IL_4V7U_404

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_404 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2854

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V7U|1|DA|C|1526
4V7U|1|DA|G|1527
4V7U|1|DA|A|1528
4V7U|1|DA|G|1529
4V7U|1|DA|G|1530
*
4V7U|1|DA|C|1541
4V7U|1|DA|U|1542
4V7U|1|DA|G|1543
4V7U|1|DA|A|1544
4V7U|1|DA|A|1545
4V7U|1|DA|G|1546

Current chains

Chain DA

23S rRNA

Nearby chains