3D structure

PDB id
4V7U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to erythromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
4V7U|1|CA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7U_417 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1466
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

4V7U|1|CA|G|147
4V7U|1|CA|G|148
4V7U|1|CA|A|149
4V7U|1|CA|U|150
4V7U|1|CA|A|151
4V7U|1|CA|A|152
4V7U|1|CA|C|153
*
4V7U|1|CA|G|168
4V7U|1|CA|C|169
4V7U|1|CA|U|170
4V7U|1|CA|A|171
4V7U|1|CA|A|172
4V7U|1|CA|U|173
4V7U|1|CA|A|174
4V7U|1|CA|C|175

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CT
30S ribosomal protein S20

Coloring options:


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