IL_4V7V_042

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_042 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0723

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V7V|1|AA|G|887
4V7V|1|AA|G|888
4V7V|1|AA|A|889
4V7V|1|AA|G|890
4V7V|1|AA|U|891
4V7V|1|AA|A|892
4V7V|1|AA|C|893
4V7V|1|AA|G|894
*
4V7V|1|AA|U|905
4V7V|1|AA|A|906
4V7V|1|AA|A|907
4V7V|1|AA|A|908
4V7V|1|AA|A|909
4V7V|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12