IL_4V7V_085

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V7V|1|BA|G|801, 4V7V|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_085 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0646

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7V|1|BA|G|674
4V7V|1|BA|A|675
4V7V|1|BA|A|676
4V7V|1|BA|A|677
4V7V|1|BA|C|678
*
4V7V|1|BA|G|799
4V7V|1|BA|A|800
4V7V|1|BA|G|801
4V7V|1|BA|A|802
4V7V|1|BA|U|803
4V7V|1|BA|A|804
4V7V|1|BA|G|805
4V7V|1|BA|C|806

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15