IL_4V7V_164

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_164 not in the Motif Atlas

Geometric match to IL_4AOB_003

Geometric discrepancy: 0.383

The information below is about IL_4AOB_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V7V|1|BA|C|2507
4V7V|1|BA|G|2508
4V7V|1|BA|G|2509
*
4V7V|1|BA|C|2579
4V7V|1|BA|U|2580
4V7V|1|BA|G|2581
4V7V|1|BA|G|2582

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3