IL_4V7V_266

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GCGG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_266 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2597

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7V|1|DA|G|377
4V7V|1|DA|C|378
4V7V|1|DA|G|379
4V7V|1|DA|G|380
*
4V7V|1|DA|C|394
4V7V|1|DA|U|395
4V7V|1|DA|G|396
4V7V|1|DA|U|397

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DX

50S ribosomal protein L28